Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization

NRNB and Cytoscape

Introduction to the National Resource for Network Biology

How to Cite Cytoscape

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Please cite the original Cytoscape paper when you use Cytoscape. This is critical to sustaining our federal funding.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T.

Cytoscape: a software environment for integrated models of biomolecular interaction networks

Genome Research 2003 Nov; 13(11):2498-504

[Abstract]
[PDF]
[PubMed entry]

Please cite the original Cytoscape paper when you use Cytoscape. This is critical to sustaining our federal funding.

For automation usage and implementation leveraging CyREST, Commands or our R and Python libraries, please cite:
Otasek, et al., Cytoscape Automation: empowering workflow-based network analysis Genome Biology, 20:185 (2019)

[Abstract]
[PDF]
[PubMed entry]

Other articles and papers about Cytoscape are available here.

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